PBC corrections for bilayer membranes
This application implements the model from
Camley, Lerner, Pastor, and Brown, J. Chem. Phys. 2015
Set viscosities, b to MARTINI values
Set viscosities, b to plausible all-atom values
Water height* H (nm):
System lateral size L (nm):
Membrane viscosity η
m
(Poise cm):
Water viscosity η
f
(Poise):
Hydrodynamic radius R (nm):
Interleaflet coupling b (Poise/cm):
Temperature T (Kelvin):
Compute for monotopic protein in single leaflet
*The total height of water in the system is 2H: if the vertical box size is Z nm, and the bilayer thickness is t, then H = (Z-t)/2.
Perform a
Bayesian approach to estimating errors
.